Publications
The Johannesson lab has published work in fields such as evolution, genomics, phylogenetics, bioinformatics, and genetics of fungi.
2024
![The global speciation continuum of the cyanobacterium Microcoleus](/images/paper_figures/41467_2024_46459_Fig5_HTML.webp)
The global speciation continuum of the cyanobacterium Microcoleus
Nature Communications
·
08 Mar 2024
·
doi:10.1038/s41467-024-46459-6
High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex
Genome Biology and Evolution
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22 Feb 2024
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doi:10.1093/gbe/evae034
![Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations](https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2Fs13100-023-00311-8/MediaObjects/13100_2023_311_Fig3_HTML.png)
Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations
Mobile DNA
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13 Jan 2024
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https://doi.org/10.1186/s13100-023-00311-8
2023
![Genome-scale phylogeny and comparative genomics of the fungal order Sordariales](https://ars.els-cdn.com/content/image/1-s2.0-S1055790323002385-ga1.jpg)
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
Molecular Phylogenetics and Evolution
·
01 Dec 2023
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doi:10.1016/j.ympev.2023.107938
![Cytological studies reveal high variation in ascospore number and shape and conidia produced directly from ascospores in Morchella galilaea](https://www.frontiersin.org/files/Articles/1286501/fmicb-14-1286501-HTML-r1/image_m/fmicb-14-1286501-g001.jpg)
Cytological studies reveal high variation in ascospore number and shape and conidia produced directly from ascospores in Morchella galilaea
Frontiers in Microbiology
·
09 Nov 2023
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doi:10.3389/fmicb.2023.1286501
2022
![Stage-specific transposon activity in the life cycle of the fairy-ring mushroom
<i>Marasmius oreades</i>](https://www.pnas.org/cms/10.1073/pnas.2208575119/asset/3213f8bc-f3ac-45de-a8f2-d79d9e2a94a9/assets/images/large/pnas.2208575119fig01.jpg)
Stage-specific transposon activity in the life cycle of the fairy-ring mushroom
Marasmius oreades
Proceedings of the National Academy of Sciences
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07 Nov 2022
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doi:10.1073/pnas.2208575119
![To self or not to self? Absence of mate choice despite costly outcrossing in the fungus <i>Podospora anserina</i>](https://onlinelibrary.wiley.com/cms/asset/2016e245-f100-43c6-91c1-e2de9c9e395b/jeb14108-fig-0001-m.png)
To self or not to self? Absence of mate choice despite costly outcrossing in the fungus Podospora anserina
Journal of Evolutionary Biology
·
20 Oct 2022
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doi:10.1111/jeb.14108
![Meiotic drive is associated with sexual incompatibility in
<i>Neurospora</i>](/images/paper_figures/evo14630-fig-0003-m.jpeg)
Meiotic drive is associated with sexual incompatibility in
Neurospora
Evolution
·
03 Oct 2022
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doi:10.1111/evo.14630
![On the Mechanistic Basis of Killer Meiotic Drive in Fungi](https://www.annualreviews.org/na101/home/literatum/publisher/ar/journals/content/micro/2022/micro.2022.76.issue-1/annurev-micro-041320-113730/20220828/images/medium/mi760305.f3.gif)
On the Mechanistic Basis of Killer Meiotic Drive in Fungi
Annual Review of Microbiology
·
08 Sep 2022
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doi:10.1146/annurev-micro-041320-113730
![Nuclear-specific gene expression in heterokaryons of the filamentous ascomycete
<i>Neurospora tetrasperma</i>](/images/paper_figures/rspb20220971f01.gif)
Nuclear-specific gene expression in heterokaryons of the filamentous ascomycete
Neurospora tetrasperma
Proceedings of the Royal Society B: Biological Sciences
·
10 Aug 2022
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doi:10.1098/rspb.2022.0971
![Allorecognition genes drive reproductive isolation in Podospora anserina](https://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs41559-022-01734-x/MediaObjects/41559_2022_1734_Fig4_HTML.png?as=webp)
Allorecognition genes drive reproductive isolation in Podospora anserina
Nature Ecology & Evolution
·
12 May 2022
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doi:10.1038/s41559-022-01734-x
![Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies](/images/paper_figures/Nguyen_et_al_2022_Fig2.png)
Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies
Fungal Genetics Reports
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18 Feb 2022
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doi:10.4148/1941-4765.2177
![The spore killers, fungal meiotic driver elements](https://www.tandfonline.com/na101/home/literatum/publisher/tandf/journals/content/umyc20/2022/umyc20.v114.i01/00275514.2021.1994815/20220314/images/medium/umyc_a_1994815_f0001_c.jpg)
The spore killers, fungal meiotic driver elements
Mycologia
·
02 Jan 2022
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doi:10.1080/00275514.2021.1994815
2021
![Molecular Mechanisms and Evolutionary Consequences of Spore Killers in Ascomycetes](https://journals.asm.org/cms/10.1128/MMBR.00016-21/asset/694d2a0e-72cd-44c5-8bef-5b2da12f4e39/assets/images/large/mmbr.00016-21-f003.jpg)
Molecular Mechanisms and Evolutionary Consequences of Spore Killers in Ascomycetes
Microbiology and Molecular Biology Reviews
·
15 Dec 2021
·
doi:10.1128/MMBR.00016-21
![In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies](https://www.frontiersin.org/files/Articles/716385/ffunb-02-716385-HTML/image_m/ffunb-02-716385-g001.jpg)
In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies
Frontiers in Fungal Biology
·
29 Sep 2021
·
doi:10.3389/ffunb.2021.716385
![The Assembled and Annotated Genome of the Fairy-Ring Fungus <i>Marasmius oreades</i>](/images/paper_figures/evab126f1.jpeg)
The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades
Genome Biology and Evolution
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29 May 2021
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doi:10.1093/gbe/evab126
![The Plot Thickens: Haploid and Triploid-Like Thalli, Hybridization, and Biased Mating Type Ratios in Letharia](https://www.frontiersin.org/files/Articles/656386/ffunb-02-656386-HTML/image_m/ffunb-02-656386-g001.jpg)
The Plot Thickens: Haploid and Triploid-Like Thalli, Hybridization, and Biased Mating Type Ratios in Letharia
Frontiers in Fungal Biology
·
26 May 2021
·
doi:10.3389/ffunb.2021.656386
![Invasion and maintenance of meiotic drivers in populations of ascomycete fungi](/images/paper_figures/evo14214-fig-0002.jpeg)
Invasion and maintenance of meiotic drivers in populations of ascomycete fungi
Evolution
·
01 May 2021
·
doi:10.1111/evo.14214
![The <i>Enterprise</i>, a massive transposon carrying <i>Spok</i> meiotic drive genes](https://genome.cshlp.org/content/31/5/789/F2.small.gif)
The Enterprise, a massive transposon carrying Spok meiotic drive genes
Genome Research
·
19 Apr 2021
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doi:10.1101/gr.267609.120
![An introgressed gene causes meiotic drive in <i>Neurospora sitophila</i>](https://www.pnas.org/cms/10.1073/pnas.2026605118/asset/19d431f7-f213-4c86-8817-d4e857a24c54/assets/images/large/pnas.2026605118fig01.jpg)
An introgressed gene causes meiotic drive in Neurospora sitophila
Proceedings of the National Academy of Sciences
·
19 Apr 2021
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doi:10.1073/pnas.2026605118
![Size Variation of the Nonrecombining Region on the Mating-Type Chromosomes in the Fungal <i>Podospora anserina</i> Species Complex](/images/paper_figures/msab040f5.jpeg)
Size Variation of the Nonrecombining Region on the Mating-Type Chromosomes in the Fungal Podospora anserina Species Complex
Molecular Biology and Evolution
·
08 Feb 2021
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doi:10.1093/molbev/msab040
2020
The taxonomy of the model filamentous fungus Podospora anserina
MycoKeys
·
25 Nov 2020
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doi:10.3897/mycokeys.75.55968
![ARBitR: an overlap-aware genome assembly scaffolder for linked reads](/images/paper_figures/btaa975f1.jpeg)
ARBitR: an overlap-aware genome assembly scaffolder for linked reads
Bioinformatics
·
20 Nov 2020
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doi:10.1093/bioinformatics/btaa975
![Comparative analysis of genome-wide DNA methylation in <i>Neurospora</i>](https://www.tandfonline.com/na101/home/literatum/publisher/tandf/journals/content/kepi20/2020/kepi20.v015.i09/15592294.2020.1741758/20210508/images/medium/kepi_a_1741758_f0001_c.jpg)
Comparative analysis of genome-wide DNA methylation in Neurospora
Epigenetics
·
31 Mar 2020
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doi:10.1080/15592294.2020.1741758
![Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei](https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fs41598-020-58025-3/MediaObjects/41598_2020_58025_Fig1_HTML.png?as=webp)
Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei
Scientific Reports
·
28 Jan 2020
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doi:10.1038/s41598-020-58025-3
![Neurospora from Natural Populations: Population Genomics Insights into the Life History of a Model Microbial Eukaryote](https://media.springernature.com/lw685/springer-static/image/chp%3A10.1007%2F978-1-0716-0199-0_13/MediaObjects/447116_1_En_13_Fig1_HTML.jpg?as=webp)
Neurospora from Natural Populations: Population Genomics Insights into the Life History of a Model Microbial Eukaryote
Methods in Molecular Biology
·
01 Jan 2020
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doi:10.1007/978-1-0716-0199-0_13
2019
![Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades](https://ars.els-cdn.com/content/image/1-s2.0-S096098221930870X-gr4.jpg)
Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades
Current Biology
·
01 Aug 2019
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doi:10.1016/j.cub.2019.07.025
![Combinations of Spok genes create multiple meiotic drivers in Podospora](https://iiif.elifesciences.org/lax/46454%2Felife-46454-box1-fig1-v1.tif/full/1234,/0/default.webp)
Combinations of Spok genes create multiple meiotic drivers in Podospora
eLife
·
26 Jul 2019
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doi:10.7554/eLife.46454
![Identification of<i>rfk-1</i>, a Meiotic Driver Undergoing RNA Editing in<i>Neurospora</i>](/images/paper_figures/93f1.jpeg)
Identification ofrfk-1, a Meiotic Driver Undergoing RNA Editing inNeurospora
Genetics
·
27 Mar 2019
·
doi:10.1534/genetics.119.302122
![Two Basidiomycete Fungi in the Cortex of Wolf Lichens](https://ars.els-cdn.com/content/image/1-s2.0-S0960982218X00049-cov200h.gif)
Two Basidiomycete Fungi in the Cortex of Wolf Lichens
Current Biology
·
01 Feb 2019
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doi:10.1016/j.cub.2018.12.022
2018
![Asexual reproduction and growth rate: independent and plastic life history traits in <i>Neurospora crassa</i>](https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fs41396-018-0294-7/MediaObjects/41396_2018_294_Fig1_HTML.png?as=webp)
Asexual reproduction and growth rate: independent and plastic life history traits in Neurospora crassa
The ISME Journal
·
09 Nov 2018
·
doi:10.1038/s41396-018-0294-7
![Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements](https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fs41467-018-06562-x/MediaObjects/41467_2018_6562_Fig1_HTML.png?as=webp)
Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements
Nature Communications
·
12 Oct 2018
·
doi:10.1038/s41467-018-06562-x
![Host genetic variation strongly influences the microbiome structure and function in fungal fruiting‐bodies](https://ami-journals.onlinelibrary.wiley.com/cms/asset/27caad00-b998-4d1a-a07e-cf8f901caa08/emi14069-fig-0001-m.png)
Host genetic variation strongly influences the microbiome structure and function in fungal fruiting‐bodies
Environmental Microbiology
·
25 Mar 2018
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doi:10.1111/1462-2920.14069
![Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing](https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fs41598-018-22470-y/MediaObjects/41598_2018_22470_Fig1_HTML.jpg?as=webp)
Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing
Scientific Reports
·
13 Mar 2018
·
doi:10.1038/s41598-018-22470-y
![Multilevel Selection in the Filamentous Ascomycete <i>Neurospora tetrasperma</i>](https://www.journals.uchicago.edu/cms/10.1086/695803/asset/images/medium/fg1.gif)
Multilevel Selection in the Filamentous Ascomycete Neurospora tetrasperma
The American Naturalist
·
01 Mar 2018
·
doi:10.1086/695803
![<i>Thamnolia tundrae</i> sp. nov., a cryptic species and putative glacial relict](/images/paper_figures/fig1g.jpeg)
Thamnolia tundrae sp. nov., a cryptic species and putative glacial relict
The Lichenologist
·
01 Jan 2018
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doi:10.1017/S0024282917000615
2017
![Large-scale suppression of recombination predates genomic rearrangements in Neurospora tetrasperma](https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fs41467-017-01317-6/MediaObjects/41467_2017_1317_Fig1_HTML.jpg?as=webp)
Large-scale suppression of recombination predates genomic rearrangements in Neurospora tetrasperma
Nature Communications
·
26 Oct 2017
·
doi:10.1038/s41467-017-01317-6
![A worldwide phylogeography of the whiteworm lichens <i>Thamnolia</i> reveals three lineages with distinct habitats and evolutionary histories](https://onlinelibrary.wiley.com/cms/asset/53ca5900-2083-44ee-a6a6-ac7a4a70d5a7/ece32917-fig-0001-m.png)
A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories
Ecology and Evolution
·
13 Apr 2017
·
doi:10.1002/ece3.2917
2016
![Epigenetic Control of Phenotypic Plasticity in the Filamentous Fungus <i>Neurospora crassa</i>](/images/paper_figures/4009f2.gif)
Epigenetic Control of Phenotypic Plasticity in the Filamentous Fungus Neurospora crassa
G3 Genes|Genomes|Genetics
·
01 Dec 2016
·
doi:10.1534/g3.116.033860
![Basidiomycete yeasts in the cortex of ascomycete macrolichens](/images/paper_figures/353_488_f3.jpeg)
Basidiomycete yeasts in the cortex of ascomycete macrolichens
Science
·
29 Jul 2016
·
doi:10.1126/science.aaf8287
![The Ecology and Evolutionary Dynamics of Meiotic Drive](https://ars.els-cdn.com/content/image/1-s2.0-S0169534716000434-gr1b1.jpg)
The Ecology and Evolutionary Dynamics of Meiotic Drive
Trends in Ecology & Evolution
·
01 Apr 2016
·
doi:10.1016/j.tree.2016.02.001
![Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus <i>Neurospora tetrasperma</i>](https://genome.cshlp.org/content/26/4/486/F1.medium.gif)
Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma
Genome Research
·
18 Feb 2016
·
doi:10.1101/gr.197244.115
2015
![Contrasted patterns in mating-type chromosomes in fungi: Hotspots versus coldspots of recombination](https://ars.els-cdn.com/content/image/1-s2.0-S1749461315000287-gr1.jpg)
Contrasted patterns in mating-type chromosomes in fungi: Hotspots versus coldspots of recombination
Fungal Biology Reviews
·
01 Dec 2015
·
doi:10.1016/j.fbr.2015.06.001
2014
![Intron evolution in <i>Neurospora</i>: the role of mutational bias and selection](https://genome.cshlp.org/content/25/1/100/F2.medium.gif)
Intron evolution in Neurospora: the role of mutational bias and selection
Genome Research
·
23 Oct 2014
·
doi:10.1101/gr.175653.114
![A global multilocus analysis of the model fungus Neurospora reveals a single recent origin of a novel genetic system](https://ars.els-cdn.com/content/image/1-s2.0-S1055790314001663-fx1.jpg)
A global multilocus analysis of the model fungus Neurospora reveals a single recent origin of a novel genetic system
Molecular Phylogenetics and Evolution
·
01 Sep 2014
·
doi:10.1016/j.ympev.2014.05.007
![Nuclear interactions in a heterokaryon: insight from the model<i>Neurospora tetrasperma</i>](https://royalsocietypublishing.org/cms/asset/ba179b88-75a7-4710-8389-5ce6852896bf/rspb20140084f06.jpg)
Nuclear interactions in a heterokaryon: insight from the modelNeurospora tetrasperma
Proceedings of the Royal Society B: Biological Sciences
·
07 Jul 2014
·
doi:10.1098/rspb.2014.0084
![Dynamics of transcriptome evolution in the model eukaryote <scp>N</scp>eurospora](https://onlinelibrary.wiley.com/cms/asset/bdc1fedd-2a06-4111-a0e7-954fa284c959/jeb12386-fig-0004-m.png)
Dynamics of transcriptome evolution in the model eukaryote N eurospora
Journal of Evolutionary Biology
·
22 May 2014
·
doi:10.1111/jeb.12386
2013
![Coexistence and expression profiles of two alternative splice variants of the pheromone receptor gene pre-1 in Neurospora crassa](https://media.springernature.com/lw685/springer-static/image/art%3A10.1007%2Fs00203-013-0923-5/MediaObjects/203_2013_923_Fig1_HTML.gif?as=webp)
Coexistence and expression profiles of two alternative splice variants of the pheromone receptor gene pre-1 in Neurospora crassa
Archives of Microbiology
·
11 Sep 2013
·
doi:10.1007/s00203-013-0923-5
![Evolutionary Dynamics of Sex-Biased Genes in a Hermaphrodite Fungus](/images/paper_figures/mst143f2p.jpeg)
Evolutionary Dynamics of Sex-Biased Genes in a Hermaphrodite Fungus
Molecular Biology and Evolution
·
20 Aug 2013
·
doi:10.1093/molbev/mst143
![Sex-linked transcriptional divergence in the hermaphrodite fungus<i>Neurospora tetrasperma</i>](https://royalsocietypublishing.org/cms/asset/4c923a90-6a7f-416a-a01a-25272a31811b/rspb20130862f01.jpg)
Sex-linked transcriptional divergence in the hermaphrodite fungusNeurospora tetrasperma
Proceedings of the Royal Society B: Biological Sciences
·
07 Aug 2013
·
doi:10.1098/rspb.2013.0862
![<i>Neurospora</i> and the dead-end hypothesis: genomic consequences of selfing in the model genus](/images/paper_figures/evo12206-fig-0001.jpeg)
Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus
Evolution
·
05 Aug 2013
·
doi:10.1111/evo.12206
2012
![Analyses of expressed sequence tags in Neurosporareveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi](https://media.springernature.com/lw685/springer-static/image/art%3A10.1186%2F1471-2148-12-229/MediaObjects/12862_2012_Article_2245_Fig1_HTML.jpg?as=webp)
Analyses of expressed sequence tags in Neurosporareveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi
BMC Evolutionary Biology
·
27 Nov 2012
·
doi:10.1186/1471-2148-12-229
![Neurospora as a model to empirically test central hypotheses in eukaryotic genome evolution](https://onlinelibrary.wiley.com/cms/asset/59c35edf-5900-41e4-8915-2e6257eea514/mcontent.jpg)
Neurospora as a model to empirically test central hypotheses in eukaryotic genome evolution
BioEssays
·
12 Sep 2012
·
doi:10.1002/bies.201200110
![Quantifying functional heterothallism in the pseudohomothallic ascomycete Neurospora tetrasperma](https://ars.els-cdn.com/content/image/1-s2.0-S1878614612001183-gr1.jpg)
Quantifying functional heterothallism in the pseudohomothallic ascomycete Neurospora tetrasperma
Fungal Biology
·
01 Sep 2012
·
doi:10.1016/j.funbio.2012.06.006
![Deciphering the Relationship between Mating System and the Molecular Evolution of the Pheromone and Receptor Genes in Neurospora](/images/paper_figures/mss193f3p.jpeg)
Deciphering the Relationship between Mating System and the Molecular Evolution of the Pheromone and Receptor Genes in Neurospora
Molecular Biology and Evolution
·
31 Aug 2012
·
doi:10.1093/molbev/mss193
Large-Scale Introgression Shapes the Evolution of the Mating-Type Chromosomes of the Filamentous Ascomycete Neurospora tetrasperma
PLoS Genetics
·
26 Jul 2012
·
doi:10.1371/journal.pgen.1002820
![Unidirectional Evolutionary Transitions in Fungal Mating Systems and the Role of Transposable Elements](/images/paper_figures/mss132f1.jpeg)
Unidirectional Evolutionary Transitions in Fungal Mating Systems and the Role of Transposable Elements
Molecular Biology and Evolution
·
10 Jul 2012
·
doi:10.1093/molbev/mss132
![Sex-specific gene expression during asexual development of Neurospora crassa](https://ars.els-cdn.com/content/image/1-s2.0-S1087184512000825-gr1.jpg)
Sex-specific gene expression during asexual development of Neurospora crassa
Fungal Genetics and Biology
·
01 Jul 2012
·
doi:10.1016/j.fgb.2012.05.004
![Occurrence and impact of the root-rot biocontrol agent Phlebiopsis gigantea on soil fungal communities in Picea abies forests of northern Europe](/images/paper_figures/fem1366-fig-0001.jpeg)
Occurrence and impact of the root-rot biocontrol agent Phlebiopsis gigantea on soil fungal communities in Picea abies forests of northern Europe
FEMS Microbiology Ecology
·
18 Apr 2012
·
doi:10.1111/j.1574-6941.2012.01366.x
![Genome-Wide Selection on Codon Usage at the Population Level in the Fungal Model Organism Neurospora crassa](/images/paper_figures/molbiolevolmss065f02_lw.jpeg)
Genome-Wide Selection on Codon Usage at the Population Level in the Fungal Model Organism Neurospora crassa
Molecular Biology and Evolution
·
14 Feb 2012
·
doi:10.1093/molbev/mss065
2011
![Initial fungal colonizer affects mass loss and fungal community development in Picea abies logs 6yr after inoculation](https://ars.els-cdn.com/content/image/1-s2.0-S1754504811000717-gr1.jpg)
Initial fungal colonizer affects mass loss and fungal community development in Picea abies logs 6yr after inoculation
Fungal Ecology
·
01 Dec 2011
·
doi:10.1016/j.funeco.2011.07.001
![Consequences of reproductive mode on genome evolution in fungi](https://ars.els-cdn.com/content/image/1-s2.0-S1087184511000508-gr1.jpg)
Consequences of reproductive mode on genome evolution in fungi
Fungal Genetics and Biology
·
01 Jul 2011
·
doi:10.1016/j.fgb.2011.02.005
![A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi](https://ars.els-cdn.com/content/image/1-s2.0-S105579031100162X-gr5.jpg)
A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi
Molecular Phylogenetics and Evolution
·
01 Jun 2011
·
doi:10.1016/j.ympev.2011.03.023
![Degeneration in Codon Usage within the Region of Suppressed Recombination in the Mating-Type Chromosomes of Neurospora tetrasperma](https://journals.asm.org/cms/10.1128/EC.00284-10/asset/6a53a488-b841-4a6f-8838-b4583ac1a341/assets/graphic/zek9990937080003.jpeg)
Degeneration in Codon Usage within the Region of Suppressed Recombination in the Mating-Type Chromosomes of Neurospora tetrasperma
Eukaryotic Cell
·
01 Apr 2011
·
doi:10.1128/EC.00284-10
![Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma](https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fhdy.2011.11/MediaObjects/41437_2011_Article_BFhdy201111_Fig1_HTML.jpg?as=webp)
Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma
Heredity
·
09 Mar 2011
·
doi:10.1038/hdy.2011.11
Evolution of Synonymous Codon Usage in Neurospora tetrasperma and Neurospora discreta
Genome Biology and Evolution
·
01 Jan 2011
·
doi:10.1093/gbe/evr018
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12 Evolution of Mating-Type Loci and Mating-Type Chromosomes in Model Species of Filamentous Ascomycetes
Evolution of Fungi and Fungal-Like Organisms
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01 Jan 2011
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doi:10.1007/978-3-642-19974-5_12
2010
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Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora
Fungal Genetics and Biology
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01 Oct 2010
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doi:10.1016/j.fgb.2010.06.008
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Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma
BMC Evolutionary Biology
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31 Jul 2010
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doi:10.1186/1471-2148-10-234
2009
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Phylogenetic and biological species diversity within the Neurospora tetrasperma complex
Journal of Evolutionary Biology
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19 Aug 2009
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doi:10.1111/j.1420-9101.2009.01801.x
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Trikaryon formation and nuclear selection in pairings between heterokaryons and homokaryons of the root rot pathogen Heterobasidion parviporum
Mycological Research
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01 May 2009
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doi:10.1016/j.mycres.2009.01.006
2008
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Evolutionary significance of imbalanced nuclear ratios within heterokaryons of the Basidiomycete fungus Heterobasidium parviporum
Evolution
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01 Sep 2008
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doi:10.1111/j.1558-5646.2008.00462.x
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The evolutionary trajectory of the mating-type (mat) genes in Neurosporarelates to reproductive behavior of taxa
BMC Evolutionary Biology
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11 Apr 2008
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doi:10.1186/1471-2148-8-109
The Mating-Type Chromosome in the Filamentous Ascomycete Neurospora tetrasperma Represents a Model for Early Evolution of Sex Chromosomes
PLoS Genetics
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14 Mar 2008
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doi:10.1371/journal.pgen.1000030
2007
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The Evolution of the Pheromonal Signal System and Its Potential Role for Reproductive Isolation in Heterothallic Neurospora
Molecular Biology and Evolution
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17 Nov 2007
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doi:10.1093/molbev/msm253
Fungal species: Thoughts on their recognition, maintenance and selection. In G. Gadd, S. Watkinson, & P. Dyer (Eds.), Fungi in the Environment
Cambridge University Press
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12 Apr 2007
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doi:10.1017/CBO9780511541797
2006
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Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii
Fungal Genetics and Biology
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01 Aug 2006
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doi:10.1016/j.fgb.2006.02.003
2005
Concerted Evolution in the Repeats of an Immunomodulating Cell Surface Protein, SOWgp, of the Human Pathogenic Fungi Coccidioides immitis and C. posadasii
Genetics
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01 Sep 2005
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doi:10.1534/genetics.105.040923
2004
![Nuclear reassortment between vegetative mycelia in natural populations of the basidiomycete Heterobasidion annosum](https://ars.els-cdn.com/content/image/1-s2.0-S1087184504000064-gr1.gif)
Nuclear reassortment between vegetative mycelia in natural populations of the basidiomycete Heterobasidion annosum
Fungal Genetics and Biology
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01 May 2004
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doi:10.1016/j.fgb.2004.01.002
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Positive Directional Selection in the Proline-Rich Antigen (PRA) Gene Among the Human Pathogenic Fungi Coccidioides immitis, C. posadasii and Their Closest Relatives
Molecular Biology and Evolution
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12 Feb 2004
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doi:10.1093/molbev/msh124
2003
Albatrellus citrinus sp. nov., connected to Picea abies on lime rich soils
Mycological Research
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01 Oct 2003
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doi:10.1017/S0953756203008359
![Molecular markers reveal genetic isolation and phylogeography of the S and F intersterility groups of the wood-decay fungus Heterobasidion annosum](https://ars.els-cdn.com/content/image/1-s2.0-S1055790303000873-gr3.gif)
Molecular markers reveal genetic isolation and phylogeography of the S and F intersterility groups of the wood-decay fungus Heterobasidion annosum
Molecular Phylogenetics and Evolution
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01 Oct 2003
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doi:10.1016/S1055-7903(03)00087-3
![Parental tracking in the postfire wood decay ascomycete <i>Daldinia loculata</i> using highly variable nuclear gene loci](https://onlinelibrary.wiley.com/cms/asset/dde0deaf-2351-4651-992a-a5b6faeda8f0/mec_1858_f1.gif)
Parental tracking in the postfire wood decay ascomycete Daldinia loculata using highly variable nuclear gene loci
Molecular Ecology
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27 May 2003
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doi:10.1046/j.1365-294X.2003.01858.x
2002
![Differential decay extension capability of <i>Daldinia</i> spp. in wood of Betula pendula, <i>Alnus glutinosa</i> and <i>Fraxinus excelsior</i>](https://ars.els-cdn.com/content/image/1-s2.0-S0378112701007162-gr1.jpg)
Differential decay extension capability of Daldinia spp. in wood of Betula pendula, Alnus glutinosa and Fraxinus excelsior
Forest Ecology and Management
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01 Aug 2002
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doi:10.1016/S0378-1127(01)00716-2
Transmission of double-stranded RNA in Heterobasidion annosum
Fungal Genetics and Biology
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01 Jul 2002
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doi:10.1016/S1087-1845(02)00011-7
2001
![Post-fire legacy of ectomycorrhizal fungal communities in the Swedish boreal forest in relation to fire severity and logging intensity](https://ars.els-cdn.com/content/image/1-s2.0-S0006320700002305-gr1.jpg)
Post-fire legacy of ectomycorrhizal fungal communities in the Swedish boreal forest in relation to fire severity and logging intensity
Biological Conservation
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01 Aug 2001
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doi:10.1016/S0006-3207(00)00230-5
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Genetic differentiation in Eurasian populations of the postfire ascomycete Daldinia loculata
Molecular Ecology
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01 Jul 2001
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doi:10.1046/j.1365-294X.2001.01317.x
Local population structure of the wood decay ascomycete Daldinia loculata
Mycologia
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01 May 2001
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doi:10.1080/00275514.2001.12063176
2000
Molecular and morphological investigation of Daldinia in northern Europe
Mycological Research
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01 Mar 2000
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doi:10.1017/S0953756299001719
Development of primer sets to amplify fragments of conserved genes for use in population studies of the fungus Daldinia loculata
Molecular Ecology
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01 Mar 2000
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doi:10.1046/j.1365-294x.2000.00874-6.x
Taxonomy of Antrodiella inferred from morphological and molecular data
Mycological Research
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01 Jan 2000
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doi:10.1017/S0953756299008953
1999
Sarcodon imbricatus and S. squamosus — two confused species
Mycological Research
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01 Nov 1999
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doi:10.1017/S0953756299008709
Cladistic analysis of European species of Rhizopogon (Basidiomycotina) based on morphological and molecular characters
Mycotaxon
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30 Jun 1999
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url:http://www.cybertruffle.org.uk/cyberliber/59575/0071/0267.htm
Molecular relationships within the genus Amylostereum as determined by internal transcribed spacer sequences of the ribosomal DNA
Mycotaxon
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30 Jun 1999
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url:http://www.cybertruffle.org.uk/cyberliber/59575/0071/0155.htm
Molecular identification of wood-inhabiting fungi in an unmanaged Picea abies forest in Sweden
Forest Ecology and Management
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01 Mar 1999
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doi:10.1016/S0378-1127(98)00399-5