Publications
The Johannesson lab has published work in fields such as evolution, genomics, phylogenetics, bioinformatics, and genetics of fungi.
2024
High rate of gene family evolution in proximity to the origin of ectomycorrhizal symbiosis in Inocybaceae
New Phytologist
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07 Aug 2024
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doi:10.1111/nph.20007
The global speciation continuum of the cyanobacterium Microcoleus
Nature Communications
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08 Mar 2024
·
doi:10.1038/s41467-024-46459-6
High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex
Genome Biology and Evolution
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22 Feb 2024
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doi:10.1093/gbe/evae034
Evolutionary dynamics of the LTR-retrotransposon crapaud in the Podospora anserina species complex and the interaction with repeat-induced point mutations
Mobile DNA
·
13 Jan 2024
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https://doi.org/10.1186/s13100-023-00311-8
2023
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
Molecular Phylogenetics and Evolution
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01 Dec 2023
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doi:10.1016/j.ympev.2023.107938
Cytological studies reveal high variation in ascospore number and shape and conidia produced directly from ascospores in Morchella galilaea
Frontiers in Microbiology
·
09 Nov 2023
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doi:10.3389/fmicb.2023.1286501
2022
Stage-specific transposon activity in the life cycle of the fairy-ring mushroom
Marasmius oreades
Proceedings of the National Academy of Sciences
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07 Nov 2022
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doi:10.1073/pnas.2208575119
To self or not to self? Absence of mate choice despite costly outcrossing in the fungus Podospora anserina
Journal of Evolutionary Biology
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20 Oct 2022
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doi:10.1111/jeb.14108
Meiotic drive is associated with sexual incompatibility in
Neurospora
Evolution
·
03 Oct 2022
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doi:10.1111/evo.14630
On the Mechanistic Basis of Killer Meiotic Drive in Fungi
Annual Review of Microbiology
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08 Sep 2022
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doi:10.1146/annurev-micro-041320-113730
Nuclear-specific gene expression in heterokaryons of the filamentous ascomycete
Neurospora tetrasperma
Proceedings of the Royal Society B: Biological Sciences
·
10 Aug 2022
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doi:10.1098/rspb.2022.0971
Allorecognition genes drive reproductive isolation in Podospora anserina
Nature Ecology & Evolution
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12 May 2022
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doi:10.1038/s41559-022-01734-x
Transposon- and Genome Dynamics in the Fungal Genus Neurospora: Insights from Nearly Gapless Genome Assemblies
Fungal Genetics Reports
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18 Feb 2022
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doi:10.4148/1941-4765.2177
The spore killers, fungal meiotic driver elements
Mycologia
·
02 Jan 2022
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doi:10.1080/00275514.2021.1994815
2021
Molecular Mechanisms and Evolutionary Consequences of Spore Killers in Ascomycetes
Microbiology and Molecular Biology Reviews
·
15 Dec 2021
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doi:10.1128/MMBR.00016-21
In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies
Frontiers in Fungal Biology
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29 Sep 2021
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doi:10.3389/ffunb.2021.716385
The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades
Genome Biology and Evolution
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29 May 2021
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doi:10.1093/gbe/evab126
The Plot Thickens: Haploid and Triploid-Like Thalli, Hybridization, and Biased Mating Type Ratios in Letharia
Frontiers in Fungal Biology
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26 May 2021
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doi:10.3389/ffunb.2021.656386
Invasion and maintenance of meiotic drivers in populations of ascomycete fungi
Evolution
·
01 May 2021
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doi:10.1111/evo.14214
The Enterprise, a massive transposon carrying Spok meiotic drive genes
Genome Research
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19 Apr 2021
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doi:10.1101/gr.267609.120
An introgressed gene causes meiotic drive in Neurospora sitophila
Proceedings of the National Academy of Sciences
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19 Apr 2021
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doi:10.1073/pnas.2026605118
Size Variation of the Nonrecombining Region on the Mating-Type Chromosomes in the Fungal Podospora anserina Species Complex
Molecular Biology and Evolution
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08 Feb 2021
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doi:10.1093/molbev/msab040
2020
The taxonomy of the model filamentous fungus Podospora anserina
MycoKeys
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25 Nov 2020
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doi:10.3897/mycokeys.75.55968
ARBitR: an overlap-aware genome assembly scaffolder for linked reads
Bioinformatics
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20 Nov 2020
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doi:10.1093/bioinformatics/btaa975
Comparative analysis of genome-wide DNA methylation in Neurospora
Epigenetics
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31 Mar 2020
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doi:10.1080/15592294.2020.1741758
Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei
Scientific Reports
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28 Jan 2020
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doi:10.1038/s41598-020-58025-3
Neurospora from Natural Populations: Population Genomics Insights into the Life History of a Model Microbial Eukaryote
Methods in Molecular Biology
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01 Jan 2020
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doi:10.1007/978-1-0716-0199-0_13
2019
Maintenance of High Genome Integrity over Vegetative Growth in the Fairy-Ring Mushroom Marasmius oreades
Current Biology
·
01 Aug 2019
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doi:10.1016/j.cub.2019.07.025
Combinations of Spok genes create multiple meiotic drivers in Podospora
eLife
·
26 Jul 2019
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doi:10.7554/eLife.46454
Identification ofrfk-1, a Meiotic Driver Undergoing RNA Editing inNeurospora
Genetics
·
27 Mar 2019
·
doi:10.1534/genetics.119.302122
Two Basidiomycete Fungi in the Cortex of Wolf Lichens
Current Biology
·
01 Feb 2019
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doi:10.1016/j.cub.2018.12.022
2018
Asexual reproduction and growth rate: independent and plastic life history traits in Neurospora crassa
The ISME Journal
·
09 Nov 2018
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doi:10.1038/s41396-018-0294-7
Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements
Nature Communications
·
12 Oct 2018
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doi:10.1038/s41467-018-06562-x
Host genetic variation strongly influences the microbiome structure and function in fungal fruiting‐bodies
Environmental Microbiology
·
25 Mar 2018
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doi:10.1111/1462-2920.14069
Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing
Scientific Reports
·
13 Mar 2018
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doi:10.1038/s41598-018-22470-y
Multilevel Selection in the Filamentous Ascomycete Neurospora tetrasperma
The American Naturalist
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01 Mar 2018
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doi:10.1086/695803
Thamnolia tundrae sp. nov., a cryptic species and putative glacial relict
The Lichenologist
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01 Jan 2018
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doi:10.1017/S0024282917000615
2017
Large-scale suppression of recombination predates genomic rearrangements in Neurospora tetrasperma
Nature Communications
·
26 Oct 2017
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doi:10.1038/s41467-017-01317-6
A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories
Ecology and Evolution
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13 Apr 2017
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doi:10.1002/ece3.2917
2016
Epigenetic Control of Phenotypic Plasticity in the Filamentous Fungus Neurospora crassa
G3 Genes|Genomes|Genetics
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01 Dec 2016
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doi:10.1534/g3.116.033860
Basidiomycete yeasts in the cortex of ascomycete macrolichens
Science
·
29 Jul 2016
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doi:10.1126/science.aaf8287
The Ecology and Evolutionary Dynamics of Meiotic Drive
Trends in Ecology & Evolution
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01 Apr 2016
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doi:10.1016/j.tree.2016.02.001
Introgression maintains the genetic integrity of the mating-type determining chromosome of the fungus Neurospora tetrasperma
Genome Research
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18 Feb 2016
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doi:10.1101/gr.197244.115
2015
Contrasted patterns in mating-type chromosomes in fungi: Hotspots versus coldspots of recombination
Fungal Biology Reviews
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01 Dec 2015
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doi:10.1016/j.fbr.2015.06.001
2014
Intron evolution in Neurospora: the role of mutational bias and selection
Genome Research
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23 Oct 2014
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doi:10.1101/gr.175653.114
A global multilocus analysis of the model fungus Neurospora reveals a single recent origin of a novel genetic system
Molecular Phylogenetics and Evolution
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01 Sep 2014
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doi:10.1016/j.ympev.2014.05.007
Nuclear interactions in a heterokaryon: insight from the modelNeurospora tetrasperma
Proceedings of the Royal Society B: Biological Sciences
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07 Jul 2014
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doi:10.1098/rspb.2014.0084
Dynamics of transcriptome evolution in the model eukaryote N eurospora
Journal of Evolutionary Biology
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22 May 2014
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doi:10.1111/jeb.12386
2013
Coexistence and expression profiles of two alternative splice variants of the pheromone receptor gene pre-1 in Neurospora crassa
Archives of Microbiology
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11 Sep 2013
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doi:10.1007/s00203-013-0923-5
Evolutionary Dynamics of Sex-Biased Genes in a Hermaphrodite Fungus
Molecular Biology and Evolution
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20 Aug 2013
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doi:10.1093/molbev/mst143
Sex-linked transcriptional divergence in the hermaphrodite fungusNeurospora tetrasperma
Proceedings of the Royal Society B: Biological Sciences
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07 Aug 2013
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doi:10.1098/rspb.2013.0862
Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus
Evolution
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05 Aug 2013
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doi:10.1111/evo.12206
2012
Analyses of expressed sequence tags in Neurosporareveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi
BMC Evolutionary Biology
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27 Nov 2012
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doi:10.1186/1471-2148-12-229
Neurospora as a model to empirically test central hypotheses in eukaryotic genome evolution
BioEssays
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12 Sep 2012
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doi:10.1002/bies.201200110
Quantifying functional heterothallism in the pseudohomothallic ascomycete Neurospora tetrasperma
Fungal Biology
·
01 Sep 2012
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doi:10.1016/j.funbio.2012.06.006
Deciphering the Relationship between Mating System and the Molecular Evolution of the Pheromone and Receptor Genes in Neurospora
Molecular Biology and Evolution
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31 Aug 2012
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doi:10.1093/molbev/mss193
Large-Scale Introgression Shapes the Evolution of the Mating-Type Chromosomes of the Filamentous Ascomycete Neurospora tetrasperma
PLoS Genetics
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26 Jul 2012
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doi:10.1371/journal.pgen.1002820
Unidirectional Evolutionary Transitions in Fungal Mating Systems and the Role of Transposable Elements
Molecular Biology and Evolution
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10 Jul 2012
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doi:10.1093/molbev/mss132
Sex-specific gene expression during asexual development of Neurospora crassa
Fungal Genetics and Biology
·
01 Jul 2012
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doi:10.1016/j.fgb.2012.05.004
Occurrence and impact of the root-rot biocontrol agent Phlebiopsis gigantea on soil fungal communities in Picea abies forests of northern Europe
FEMS Microbiology Ecology
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18 Apr 2012
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doi:10.1111/j.1574-6941.2012.01366.x
Genome-Wide Selection on Codon Usage at the Population Level in the Fungal Model Organism Neurospora crassa
Molecular Biology and Evolution
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14 Feb 2012
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doi:10.1093/molbev/mss065
2011
Initial fungal colonizer affects mass loss and fungal community development in Picea abies logs 6yr after inoculation
Fungal Ecology
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01 Dec 2011
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doi:10.1016/j.funeco.2011.07.001
Consequences of reproductive mode on genome evolution in fungi
Fungal Genetics and Biology
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01 Jul 2011
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doi:10.1016/j.fgb.2011.02.005
A comprehensive phylogeny of Neurospora reveals a link between reproductive mode and molecular evolution in fungi
Molecular Phylogenetics and Evolution
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01 Jun 2011
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doi:10.1016/j.ympev.2011.03.023
Degeneration in Codon Usage within the Region of Suppressed Recombination in the Mating-Type Chromosomes of Neurospora tetrasperma
Eukaryotic Cell
·
01 Apr 2011
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doi:10.1128/EC.00284-10
Evidence of the accumulation of allele-specific non-synonymous substitutions in the young region of recombination suppression within the mating-type chromosomes of Neurospora tetrasperma
Heredity
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09 Mar 2011
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doi:10.1038/hdy.2011.11
Evolution of Synonymous Codon Usage in Neurospora tetrasperma and Neurospora discreta
Genome Biology and Evolution
·
01 Jan 2011
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doi:10.1093/gbe/evr018
12 Evolution of Mating-Type Loci and Mating-Type Chromosomes in Model Species of Filamentous Ascomycetes
Evolution of Fungi and Fungal-Like Organisms
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01 Jan 2011
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doi:10.1007/978-3-642-19974-5_12
2010
Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora
Fungal Genetics and Biology
·
01 Oct 2010
·
doi:10.1016/j.fgb.2010.06.008
Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma
BMC Evolutionary Biology
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31 Jul 2010
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doi:10.1186/1471-2148-10-234
2009
Phylogenetic and biological species diversity within the Neurospora tetrasperma complex
Journal of Evolutionary Biology
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19 Aug 2009
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doi:10.1111/j.1420-9101.2009.01801.x
Trikaryon formation and nuclear selection in pairings between heterokaryons and homokaryons of the root rot pathogen Heterobasidion parviporum
Mycological Research
·
01 May 2009
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doi:10.1016/j.mycres.2009.01.006
2008
Evolutionary significance of imbalanced nuclear ratios within heterokaryons of the Basidiomycete fungus Heterobasidium parviporum
Evolution
·
01 Sep 2008
·
doi:10.1111/j.1558-5646.2008.00462.x
The evolutionary trajectory of the mating-type (mat) genes in Neurosporarelates to reproductive behavior of taxa
BMC Evolutionary Biology
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11 Apr 2008
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doi:10.1186/1471-2148-8-109
The Mating-Type Chromosome in the Filamentous Ascomycete Neurospora tetrasperma Represents a Model for Early Evolution of Sex Chromosomes
PLoS Genetics
·
14 Mar 2008
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doi:10.1371/journal.pgen.1000030
2007
The Evolution of the Pheromonal Signal System and Its Potential Role for Reproductive Isolation in Heterothallic Neurospora
Molecular Biology and Evolution
·
17 Nov 2007
·
doi:10.1093/molbev/msm253
Fungal species: Thoughts on their recognition, maintenance and selection. In G. Gadd, S. Watkinson, & P. Dyer (Eds.), Fungi in the Environment
Cambridge University Press
·
12 Apr 2007
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doi:10.1017/CBO9780511541797
2006
Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii
Fungal Genetics and Biology
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01 Aug 2006
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doi:10.1016/j.fgb.2006.02.003
2005
Concerted Evolution in the Repeats of an Immunomodulating Cell Surface Protein, SOWgp, of the Human Pathogenic Fungi Coccidioides immitis and C. posadasii
Genetics
·
01 Sep 2005
·
doi:10.1534/genetics.105.040923
2004
Nuclear reassortment between vegetative mycelia in natural populations of the basidiomycete Heterobasidion annosum
Fungal Genetics and Biology
·
01 May 2004
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doi:10.1016/j.fgb.2004.01.002
Positive Directional Selection in the Proline-Rich Antigen (PRA) Gene Among the Human Pathogenic Fungi Coccidioides immitis, C. posadasii and Their Closest Relatives
Molecular Biology and Evolution
·
12 Feb 2004
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doi:10.1093/molbev/msh124
2003
Albatrellus citrinus sp. nov., connected to Picea abies on lime rich soils
Mycological Research
·
01 Oct 2003
·
doi:10.1017/S0953756203008359
Molecular markers reveal genetic isolation and phylogeography of the S and F intersterility groups of the wood-decay fungus Heterobasidion annosum
Molecular Phylogenetics and Evolution
·
01 Oct 2003
·
doi:10.1016/S1055-7903(03)00087-3
Parental tracking in the postfire wood decay ascomycete Daldinia loculata using highly variable nuclear gene loci
Molecular Ecology
·
27 May 2003
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doi:10.1046/j.1365-294X.2003.01858.x
2002
Differential decay extension capability of Daldinia spp. in wood of Betula pendula, Alnus glutinosa and Fraxinus excelsior
Forest Ecology and Management
·
01 Aug 2002
·
doi:10.1016/S0378-1127(01)00716-2
Transmission of double-stranded RNA in Heterobasidion annosum
Fungal Genetics and Biology
·
01 Jul 2002
·
doi:10.1016/S1087-1845(02)00011-7
2001
Post-fire legacy of ectomycorrhizal fungal communities in the Swedish boreal forest in relation to fire severity and logging intensity
Biological Conservation
·
01 Aug 2001
·
doi:10.1016/S0006-3207(00)00230-5
Genetic differentiation in Eurasian populations of the postfire ascomycete Daldinia loculata
Molecular Ecology
·
01 Jul 2001
·
doi:10.1046/j.1365-294X.2001.01317.x
Local population structure of the wood decay ascomycete Daldinia loculata
Mycologia
·
01 May 2001
·
doi:10.1080/00275514.2001.12063176
2000
Molecular and morphological investigation of Daldinia in northern Europe
Mycological Research
·
01 Mar 2000
·
doi:10.1017/S0953756299001719
Development of primer sets to amplify fragments of conserved genes for use in population studies of the fungus Daldinia loculata
Molecular Ecology
·
01 Mar 2000
·
doi:10.1046/j.1365-294x.2000.00874-6.x
Taxonomy of Antrodiella inferred from morphological and molecular data
Mycological Research
·
01 Jan 2000
·
doi:10.1017/S0953756299008953
1999
Sarcodon imbricatus and S. squamosus — two confused species
Mycological Research
·
01 Nov 1999
·
doi:10.1017/S0953756299008709
Cladistic analysis of European species of Rhizopogon (Basidiomycotina) based on morphological and molecular characters
Mycotaxon
·
30 Jun 1999
·
url:http://www.cybertruffle.org.uk/cyberliber/59575/0071/0267.htm
Molecular relationships within the genus Amylostereum as determined by internal transcribed spacer sequences of the ribosomal DNA
Mycotaxon
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30 Jun 1999
·
url:http://www.cybertruffle.org.uk/cyberliber/59575/0071/0155.htm
Molecular identification of wood-inhabiting fungi in an unmanaged Picea abies forest in Sweden
Forest Ecology and Management
·
01 Mar 1999
·
doi:10.1016/S0378-1127(98)00399-5